Scaffold Ga0102963_1000395

Overview

Basic Information

• Taxon OID: 3300009001
• Scaffold ID: Ga0102963_1000395
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18851
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (35.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4973
  • Long. (^o): -122.1295
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011840	Metagenome	286	N
F015086	Metagenome / Metatranscriptome	257	N
F026163	Metagenome	199	Y
F029287	Metagenome	189	N
F035121	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_10003951	F029287	N/A	LREVCDKIGKHQANDLYQEVFLIICEKDEEWIFEKYNSGYWEGLVIRIVVNQAYGQYTRFNKLFKQEPMLDSSKLEIPDHDVDYRKEILHYCIDIVLRDYDWYHTKIWKLYSEGGRNIKPKSARSISRATGISRHEI
Ga0102963_100039519	F026163	N/A	MPLIKRLIPFAISTLIALAALQPQRAFCQYSDSTIKEINQRLIKCIECEEKLTLYKELAKSDSTQIMNQAAIITNQEQTISQEKSKNKTLQKINAVQFALLVLALIL*
Ga0102963_100039520	F015086	N/A	MTLNQIIEKIKTQAESHKMVGKFAVGAEFDFAVDEVKYYPLVWLVPNGFTFNTEQKAVNYDFSMLVMDRQFESGSNTIEVLSDTAGIIIDIVTLLKRNVTDADFEVQVSGNAEPFFDSRVDICGGHGISFTINTPYLESYCDIPT*
Ga0102963_100039526	F035121	N/A	MRFPVTFEQFTKNSEKAITYLLLFVVTALYIRAERQSNLATAQCEKRLVKCETELRKMSAMLKTQDSLCSSLVTEIKIYKALGKI*
Ga0102963_10003953	F011840	N/A	MFIQDVNQEMILERLKKLCSLGGIKPPQQGKEFIEFIQDGFARCEIETMDKAFREYLLGKYTIRQPQQLNVKFVSDIMNAYIKDNSHTIKLKPREYMAIEAPVDNSPKMSAFEIAKRNWENVRTKRGVVFPSFLCNAWDELEDKPQIDEKRVGELVEMIHDNQNIWFYKMKRERGHKQKRSQLDEEIIYKAACMAYYLEL*