Scaffold Ga0102960_1106624

Overview

Basic Information

• Taxon OID: 3300009000
• Scaffold ID: Ga0102960_1106624
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1019
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4972
  • Long. (^o): -122.1293
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F024679	Metagenome / Metatranscriptome	205	Y
F033067	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102960_11066242	F033067	GAG	MHDLLRPLEDLKEIKKSLGENTDNKTMKLIDTKIAEYESDIKAVEEYLKNESQKYDNSILEDINTAHATESVQVMGVTGFGDLPDDIKVTYDDEEK*
Ga0102960_11066243	F007835	GAGG	MPFNPSTVRNTREQFVLQKIEYYKVMEHISKSDWERHYFDTYKEAVKMFKKLKLTKRRVLIFACRDNELGELSTGLNDRFKDE*
Ga0102960_11066245	F024679	AGG	MTTISCKIVKNKGIVRVESGVKSLLARRSATQKSIKSTIFKGLTIKSIPDRIRVLLTK