Scaffold Ga0102960_1009781

Overview

Basic Information

• Taxon OID: 3300009000
• Scaffold ID: Ga0102960_1009781
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3624
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4972
  • Long. (^o): -122.1293
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102960_10097811	F010277	AGGAGG	MSRLKDKLLEVELFVGEKLQDLTNEQVIKEVRKHFGSQMFVDHAEELLHEFQQEVNLERMQSW*
Ga0102960_10097813	F024420	GAGG	MSIYEQLRKIINANPCWQQDNTKIELLWNILLSKDKRSFREYFEEEHNIKLYDAMTFKELLVLCSQHNVGGRFK*
Ga0102960_10097814	F050005	AGGAGG	MVNKKTNYPLFHEFKIMKIGNILFNTSVEDLIEEEIEETKNLINQVKDINQLVRCR*