NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102816_1307880

Scaffold Ga0102816_1307880


Overview

Basic Information
Taxon OID3300008999 Open in IMG/M
Scaffold IDGa0102816_1307880 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067117Metagenome126N
F080239Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0102816_13078801F067117N/AMNTKIVKEKMKMLQIPVTEKQFDTLKEKADKEKRSLPNQIKIILEPYMK
Ga0102816_13078802F080239N/AMKKLNKFYVNRIVGEFFSSLNLENTSSLKDLLESKNNIVYKKFSGVINPPILDRWNWFVVIPQQFNRYAYPCNLLTVLVPPISIIKNYLLLIKNNINKSQIIKKEKYEHQDS*

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