Scaffold Ga0102816_1033171

Overview

Basic Information

• Taxon OID: 3300008999
• Scaffold ID: Ga0102816_1033171
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1513
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F046006	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102816_10331711	F046006	GGAGG	VKEYLGPLAKYINLILLLIILHFCIIVMVVNFRYIDRLNDTIDTMWHEIEQVKDTNIQLYQFIEEH
Ga0102816_10331713	F004988	AGG	VPKLIETICPRCDGNGYIRIPPVIAGIFDKATEADCPMCEEVITHMGQRITTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE*
Ga0102816_10331714	F003020	AGGAG	MPDTSRFKSVSVSTSTHKHLESLAKSRFEVPVSIQKVIEFLLAKELKVKKRAKAN*