Scaffold Ga0103502_10003569

Overview

Basic Information

• Taxon OID: 3300008998
• Scaffold ID: Ga0103502_10003569
• Source Dataset Name: Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_A100000548
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3462
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103502_100035694	F104391	N/A	MKENEGQLASPVKEECLVNSDPLDQEAKMDLKDQMVSLDHLDQRDLLDTRDPLDWLVFLVSEVFPGLKVLRVEEVIQAFLDQLVLMAGLARGVNKALLVPQDPLGKLEVPEIQGRQDLLVNRAQLV*
Ga0103502_100035695	F094857	AGG	VSLVCLVKLADRALLDLEVCLDKRALMDQGDLQAKEDHQDLKACQAWKAVREPLVLMDQTDRLDHLDLMDLLETEGFLVYQVLLAQLDPQGSKDLKEKGETLASQESKVLRDHPDLLVLLGLLVSEVSGARRVHQESKELLAWEVGLVTRVHLVQQE*
Ga0103502_100035696	F085090	GGA	LASLDHLASRAALERSDHQVNLERRATAVSLASRVFLDPSDPKDKRDQQVKMERTESQVQWADVVLQDLMALWVVWATLVLRDPGGHQAKKVREVHLESLVLLDLLGLQARAMEWTWLP*