Scaffold Ga0102831_1100047

Overview

Basic Information

• Taxon OID: 3300008996
• Scaffold ID: Ga0102831_1100047
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 966
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F036237	Metagenome / Metatranscriptome	170	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102831_11000471	F036237	N/A	EGQMYADFRFAEMSDSNYLKGRFNQFYDLNEGDQYYLEWDEEA*
Ga0102831_11000472	F053291	GGA	MITTQELIDYMYDDNLSHFDDRDTSDDCDCYIHITLQTMIKYMEAIEC*
Ga0102831_11000474	F000263	AGG	MNAEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQDLTVAQETEDLSEEAMDSMERTRCEGVLDTLTELYKLTYDLSFAIGARNEA*