Scaffold Ga0102831_1008222

Overview

Basic Information

• Taxon OID: 3300008996
• Scaffold ID: Ga0102831_1008222
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3749
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102831_100822212	F073554	AGGA	MSIEMMNDDDDFDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLTKVHNGYVIAKENDEHSLLW*
Ga0102831_100822213	F045754	GAG	MNIDDNKPWPFPSHFGDAHEDNKLIADCLELLQDFTAFQLRGEIYYGYLDVKALKIIEELREAKDNEAKSST*
Ga0102831_10082226	F054861	AGG	MNTKLLKHTRELFKSYDVPEHVRRSYRLKWVKSIRHLGDKWLFAKQITRKENTQ*
Ga0102831_10082227	F026266	AGGA	MTIETITFHFVGQLEDSGAIVDVQCQIDEDGDCRSLDSAMYQGIDVLEVISHSQWENLQWEGSKKYKLENHEQLTIAHDQECALEAVYGLSKPSLTIK*
Ga0102831_10082229	F049625	GAGG	MLSDIDLKDWIEQPSIPLYDVPRETPVKTPNGMLWFSHIDGMYSLSYDGNGQPVHLQAWVKVNPFKRKSNDNE*