Scaffold Ga0102831_1001384

Overview

Basic Information

• Taxon OID: 3300008996
• Scaffold ID: Ga0102831_1001384
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10262
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043366	Metagenome	156	Y
F045060	Metagenome / Metatranscriptome	153	Y
F070039	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102831_100138414	F070039	AGG	VTPALIELFVDRLCGMYPTTNIARNTVKNAWVKDEMLLDASEDDAKTVLKMAESLGHYPNQYEVKSLFQKVMGVRQAEVGCDECDSTGFIYTDPDFENDSIKTRYVKSCKCRSF*
Ga0102831_100138418	F045060	AGGAGG	VNYDDWAAIGHANGWLGVRRNDGATSTGGAKAMTVRAGSQRAKLLATYFREQYLTDEEAGRASGLALLPKCCYWKRCSELRQAGYIKPNGKTRISSAGVEQQVCHITAEGIQVLAGIS*
Ga0102831_10013847	F043366	N/A	VEKNPMTLMSRTVVHIRWADTHLSEGGWLDMPSYEDDGECLVDTVGFLVPVGEPGSKADHVTVWQTICKEEGIHAIHIPVAMVRDMKAIDLTLTV*