Scaffold Ga0114357_1092401

Overview

Basic Information

• Taxon OID: 3300008966
• Scaffold ID: Ga0114357_1092401
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1456
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004974	Metagenome	416	Y
F015060	Metagenome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114357_10924011	F015060	AGG	MVELRSGTNTGGQEPRTTEGRDPNIPEDIEVIEQGVQMANQGAQVMDPTNQQGQPADAAQGVYVGGTYPATLTRAALGTPSYRPPQFAFTTPPVRPLQEEFKSTKSHEEGDGSSTESVK
Ga0114357_10924012	F004974	GGA	VASRDWWIEGIKIRKLEIRYWLHFTKYQIAQFKVLAELDYQVLGEKVKTEGAPDADLVGRNYPPKLKEQPYWCTLDWKTFKDFRLWTWLQATKALDLPITEKAETWYNYFSIEGNQIKAKELLDPFRKENKKPFDIILEQEYELVYPTARRICSIHYDVPDQDPFEDLEINTHLQDSRLLPVTQAGDTISRDFLKQYLEERLQEYLALGGLKELLYRRALVLAEQKLPAPFYWDLWGNLEHLRKTYAQWLEEHIFDVPNDDEEQEVESDSDISWETD*