Scaffold Ga0114357_1077556

Overview

Basic Information

• Taxon OID: 3300008966
• Scaffold ID: Ga0114357_1077556
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1666
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020312	Metagenome	224	N
F074403	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114357_10775561	F074403	N/A	MTIEAKEKHKQEKESTNKYYRPTRHISWIEIIPKYISPREAAALSTEEKEKLLKPFERPRFPLPDLPPLARIRLFRQDLLGAESINRFHYCCQDPRPIPDTRKKWKLELYIQNK
Ga0114357_10775562	F020312	N/A	VPVVSEDPKPYYPYPTIYCTSEDSSWTDSDTSTATPYQERNIFETHCPEGAYIEKAGSAVFIITYLPGLKSPIRAYKAPRNRTNRYSDNPNYQESLYDTYYHRILTEAEQKAFEEEAPKVIQTYIKPKEEDLAPASGDRIKISEIFRFNRNFQIRLEDNRPAPIKSIKVGEGRWTSNLPNIIKYIKIRYQEWLFAGGEPGEKFFVDLWDPKALKAFADPNKDTHSGAQLLRDWNKLKEKEQNKRPIPKRKRGRNNPLNWRLV*