Scaffold Ga0102889_1009560

Overview

Basic Information

• Taxon OID: 3300008964
• Scaffold ID: Ga0102889_1009560
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3168
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.187
  • Long. (^o): -123.8837

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091608	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102889_10095602	F091608	AGGGGG	MKLSRKKRTPPLDLRKLQEVGSENRSSSKLTALAPYFLLLEEMRDKRSLNTPFVSLEALARITTARIEGHEEDDVLGSCPDTWGRETIRVPLPLLIALTDAWNSYRSADVGISLGESFGVEGKGQGKSKMKGSLEQRLKEHRIMNAVELAYLASGNTAEEVDAISLEVAIEQVAEVEELSSDTVRKYYKKHSKYLRGELKSRGLLKG*