Scaffold Ga0104242_1028798

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1028798
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 952
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F017469	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10287981	F011646	AGGGGG	MSNVLELRNGELKRVIFYEVSDAQNLAIWGGESPSEALKWYRNSPLDSKIYVQEWITDDEDAREVSPQIEITSI
Ga0104242_10287983	F011756	N/A	MSEPRYLFGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSDCEDKRVMREKESK*
Ga0104242_10287985	F017469	N/A	MKTICQFCGWEITKPEWYNSYDQAYACDDCLMDQAVEREKEKESAL*