Scaffold Ga0104242_1028454

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1028454
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 959
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005741	Metagenome / Metatranscriptome	391	Y
F021481	Metagenome / Metatranscriptome	218	Y
F048990	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10284541	F021481	N/A	KMSPILDTKKGRFYKKGDVFTTGKSGITGTISEIISVRPTLTKLGLQTENGLRWAMVKIGA*
Ga0104242_10284542	F005741	N/A	MKNRFRVEIYDANKANDLTIYSEQGVDKEYLTEIVFSNLRRFQGQVKAYVFDSIKKKKTTALIIDETTVNKINKYKVLTAKEIGLA*
Ga0104242_10284543	F048990	AGGA	MAHNLEMNGNEVAFALRGKPAWHNLANRIFNQDEEVTTATMLDEAKLSNWNVRLSPLTDHISESWNDVSDAHLVLRT