Scaffold Ga0104242_1018371

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1018371
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1214
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019061	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F040099	Metagenome / Metatranscriptome	162	Y
F048267	Metagenome / Metatranscriptome	148	Y
F074866	Metagenome / Metatranscriptome	119	Y
F074911	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10183711	F019061	N/A	EILEFLLNQFQSHSLQMNGESAWVFMNSGFPMNRARGKSARDAVINAMEAK*
Ga0104242_10183712	F074866	N/A	MNEMTEIKTCRNCKYYKDYEGVFDWISSRIFGFPTLQKCYHPNRWKNVDYVNGTVESYTTCLTERYGGSCGTMGNNWEAK*
Ga0104242_10183713	F032252	GGAGG	MKLYRYKKDGHLYTLYEQWRPFYNLVAVPYFPNQGILAKSKRSISMNDFIVVAER*
Ga0104242_10183714	F048267	N/A	MTDEEWETALKSMNEGVKKWVDEEIDKIKYNIIKDIINGDLEAL*
Ga0104242_10183715	F074911	GGAGG	MILDEEILKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYE*
Ga0104242_10183716	F040099	GAG	MTYEVQTWDDADKTVYYETVKDTIDYESARDIIVEKYSNRKVIAVIRK*