Scaffold Ga0104242_1017067

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1017067
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1263
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024742	Metagenome / Metatranscriptome	204	Y
F051929	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10170672	F051929	AGGGGG	MTEQRYFADGQEFLYPHAGDPPAPLDTKVLLLSKGGICTTGYWGRHWCLGWLPLPKRNKEKEDMK*
Ga0104242_10170674	F024742	AGGGGG	MNEEMKRIMEALMLIYGRDLQAATITVLLKDGDTAVRFITQTLPQKEAEK*