Scaffold Ga0104242_1016999

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1016999
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1266
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F009685	Metagenome / Metatranscriptome	314	Y
F023347	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10169991	F023347	N/A	KNLMLIAEQQLAEAQEVEDISEEAMDSMERTRCEGYLDALVELYNLTYQLSFAIEEKEGQKV*
Ga0104242_10169992	F001019	AGG	MTYEPSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETEDLTEAVLFCYNLGKDFTVRTLAEWNERELAYVN*
Ga0104242_10169994	F009685	GAGG	MKMSDQHIDAVLAEAQELLWGGSETENIAAHNLISNLIKDRMTFKNLK*
Ga0104242_10169995	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVAIQEAINKGVTFSDPQPVTKKAK*