Scaffold Ga0104242_1015379

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1015379
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1337
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F082675	Metagenome / Metatranscriptome	113	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10153792	F016662	GGAG	MTYLVAVTEVVYDEEYLIKEMLATGEYGINAHPISHESMVEFVKDREWQIEHNLFLTKYDIPVSIAIKDEDGTDLFFAKNKIEVK*
Ga0104242_10153793	F030094	GAGG	MKLRGIFEGTFESVWSMEVPQYEWDNYLEQHPDFDENDRDDIQEMWDYFKSIGCYDEIDDTVDTDVIMTGIETYGVEVEIN*
Ga0104242_10153794	F093864	GGAG	MYNYNVEFVLEAMVMITHVSFDEPDLSDEFIIEQARQNILSYYKIDPEVLYLQDVILHRGD*
Ga0104242_10153796	F082675	AGGA	MSKQYHWVVVYDEHWGAFMVDAESEFDRDKIMYDKETGRWEWLDPESEEETEYYRLEEILAYNLTRLDLTAERV*