Basic Information | |
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Taxon OID | 3300008962 Open in IMG/M |
Scaffold ID | Ga0104242_1009541 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1716 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Lanier in Georgia, USA | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F091274 | Metagenome / Metatranscriptome | 107 | Y |
F093196 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104242_10095412 | F093196 | N/A | MNKIPLVVGICLAVSIFYTVYSPHPFLVKQQIENSGMDFEYVTDEGSCFTQRADPIGPDSHKYILSIGKPAKPTNKEEPLYVMVGYTMKEVRLKNKSNVFRSQLSNTLYDKAINYFSSAGSNKS* |
Ga0104242_10095413 | F091274 | AGG | MEYVSLSQAIKAAADLNTPSTEYLNNFLPAYRKYHKRQNVRRAVCKISSGLAVFIVACLCYSSINNSNKLDIDTASGTDMAQHNTHGKHVVFEGNVQEVTQFIKDHVKEKTQTHNLHDYFQADVWGVHVEGEETFRFYYQCLGHGRYSVFVINE* |
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