Scaffold Ga0104242_1008353

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1008353
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021965	Metagenome / Metatranscriptome	216	N
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10083532	F024782	N/A	MIEKAIERLRAYNDWRTGKDERTMDEAGIVPKQITIDIKTVCDELEKLISMYASRN*
Ga0104242_10083535	F022862	N/A	MKFTPQQIELLIKTRDEIRDLTEKQHKLYDDLVKELNVTIYAEDWLFDYIYNECGSIEELEERM*
Ga0104242_10083537	F021965	N/A	NYNELRWWIKCQYQKFRYGVSDDEVYSLETNIAKYMVPRLQYFKKKGKMGIPMKFLPSNYDNLQDEDREKAEKIGEKEINRILDEMIFAFDYIIDPDKYVTFPKSCSWDIKDKNYFNREKNLEAKQAWDEYTKTCEQLDARKKQGLQLFVDHMDMLWI*