Scaffold Ga0104242_1006432

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1006432
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009135	Metagenome / Metatranscriptome	322	Y
F013524	Metagenome / Metatranscriptome	270	Y
F019476	Metagenome / Metatranscriptome	229	N
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10064321	F019476	N/A	TKSARIVLDIEGECVDDSDLPSLWDWKRIKLPMDLTKVKYVGIQTPNGPENVTNWMGN*
Ga0104242_10064324	F009135	AGG	MTTKKPKYYLTVNLPPNFDEVDAETIKDDLMAYINSKNQYGALYGPKSHKKGITIGKVSYQTNED*
Ga0104242_10064325	F013524	N/A	MKTNKEVIARLREFTQKNCNTALDPKLCEDIRYLCDEVERFGREIVKANDHMDEDFITIQRYKNKLERCQDKLSNYEPF*
Ga0104242_10064326	F042296	N/A	MNLFKSIIKWCGVIVYATFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYMKKENAQKYCDTYKDSHNYTFEELTISE*