Basic Information | |
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Taxon OID | 3300008962 Open in IMG/M |
Scaffold ID | Ga0104242_1003189 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3143 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Lanier in Georgia, USA | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001280 | Metagenome / Metatranscriptome | 732 | Y |
F006846 | Metagenome / Metatranscriptome | 363 | Y |
F026561 | Metagenome / Metatranscriptome | 197 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104242_10031895 | F006846 | GAG | MLFNLVEKYLMRPKRLREAIQAVVRENDELLRRLAEYKEEGPTNLTWAEGDRWYGWTYNKEKKRYYFDDIGNESIMGLWEDQWLREADTDQLDLFENQIDFE* |
Ga0104242_10031898 | F026561 | N/A | MSNFTKDDGTGMTPPPAAGSASGAVTSREATRKNPRQGVRSGIKVDTNRHGIRRETSLDPKPPKKTRPKKV* |
Ga0104242_10031899 | F001280 | N/A | MCIECGCEALGSSTGIVPITVTDVSRDGESGLTLDMTSTPEQTRQFINE* |
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