Basic Information | |
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Taxon OID | 3300008962 Open in IMG/M |
Scaffold ID | Ga0104242_1002896 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3319 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Lanier in Georgia, USA | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000258 | Metagenome / Metatranscriptome | 1443 | Y |
F001106 | Metagenome / Metatranscriptome | 776 | Y |
F001229 | Metagenome / Metatranscriptome | 741 | Y |
F001900 | Metagenome / Metatranscriptome | 620 | Y |
F005054 | Metagenome / Metatranscriptome | 413 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104242_10028961 | F000258 | GGAGG | VTADYKLDAMLEIRKYLWRELYTRNIFDEEDYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQIMFTIYSTSVAEINEIRNYMTDEFRRMDESARDINKWQGLSDKFKFHSIWIADISPTAPSEEIQGFFSAEVILEVKYSRITDNVGRFR* |
Ga0104242_10028962 | F001900 | GGAG | LDNSGLLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEAAVISKLTTNAQFKTLFTRTMFDQINTDFGNYIDALARSKPKSLHHVYEWKRTGNKTARLFKLNKISEEGLSFKIDYEFLPSRSMVPAPSNRRRHMFANKASIMEEGKPLVIRPKNAERLVFEIDGETIFMPKGQSVTVKRPGGSASTNQFTLAHSRFFSGNLINASIKNSGFQRIFNSSITKALRVPNNIKKVQYSFSANAIRSQADAALVASFGGAM* |
Ga0104242_10028963 | F001229 | GAG | MNDLIDSVLSMSLDVYKQFETQDPDTGAIVREWTYYKTINCHAKGVISNSATTRSSDKQLFSNKYTNDQIIQVRTSERLTAREKVTNIRDNNGNVIWHEINYPNETPTVFEVMGTTPVTDPFGSVIAYNSSMKRSENQQIGQ* |
Ga0104242_10028964 | F005054 | N/A | MAEILINSQSPITHRVFWNGEVANADSPPTVGLYDVTEDPAVNPAISPTQLLTTLNSQLDENNPGNYIVNIPYQYTDRNKTLRLKWNYFVNGTNVKKSDDVYVITPYVDFNHATDLGFSTDSSDPEYKSYKDLILAERYARKQIEQYTGQNFYLYDDVVVVYGYDSDILPLPAKIGELHELYADDILLLDNINEIDNWNYPVEITPTGYGIKINRANMLDNTVYIANGMVPPSINSYGGGVFRSGVPYKVQGKFGWEKVPDEVELAGIELMKDFFAKDTVWKNKYIKTISTFDWDFEFTSDVHMGTGNAYADRLLADYVLVTKAEII* |
Ga0104242_10028965 | F001106 | AGGAG | MSFETLKVSELKKIAEDFAVDTDGLKNKADIISALAEEGVTWSVYNKTMDKMEEEDMSVEILPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSNEQAQEIFDKEEGFRLATPREVQEYYN* |
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