Scaffold Ga0104242_1002896

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1002896
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3319
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10028961	F000258	GGAGG	VTADYKLDAMLEIRKYLWRELYTRNIFDEEDYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQIMFTIYSTSVAEINEIRNYMTDEFRRMDESARDINKWQGLSDKFKFHSIWIADISPTAPSEEIQGFFSAEVILEVKYSRITDNVGRFR*
Ga0104242_10028962	F001900	GGAG	LDNSGLLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEAAVISKLTTNAQFKTLFTRTMFDQINTDFGNYIDALARSKPKSLHHVYEWKRTGNKTARLFKLNKISEEGLSFKIDYEFLPSRSMVPAPSNRRRHMFANKASIMEEGKPLVIRPKNAERLVFEIDGETIFMPKGQSVTVKRPGGSASTNQFTLAHSRFFSGNLINASIKNSGFQRIFNSSITKALRVPNNIKKVQYSFSANAIRSQADAALVASFGGAM*
Ga0104242_10028963	F001229	GAG	MNDLIDSVLSMSLDVYKQFETQDPDTGAIVREWTYYKTINCHAKGVISNSATTRSSDKQLFSNKYTNDQIIQVRTSERLTAREKVTNIRDNNGNVIWHEINYPNETPTVFEVMGTTPVTDPFGSVIAYNSSMKRSENQQIGQ*
Ga0104242_10028964	F005054	N/A	MAEILINSQSPITHRVFWNGEVANADSPPTVGLYDVTEDPAVNPAISPTQLLTTLNSQLDENNPGNYIVNIPYQYTDRNKTLRLKWNYFVNGTNVKKSDDVYVITPYVDFNHATDLGFSTDSSDPEYKSYKDLILAERYARKQIEQYTGQNFYLYDDVVVVYGYDSDILPLPAKIGELHELYADDILLLDNINEIDNWNYPVEITPTGYGIKINRANMLDNTVYIANGMVPPSINSYGGGVFRSGVPYKVQGKFGWEKVPDEVELAGIELMKDFFAKDTVWKNKYIKTISTFDWDFEFTSDVHMGTGNAYADRLLADYVLVTKAEII*
Ga0104242_10028965	F001106	AGGAG	MSFETLKVSELKKIAEDFAVDTDGLKNKADIISALAEEGVTWSVYNKTMDKMEEEDMSVEILPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSNEQAQEIFDKEEGFRLATPREVQEYYN*