Scaffold Ga0104242_1002031

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1002031
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3990
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040004	Metagenome / Metatranscriptome	162	N
F052563	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10020314	F040004	GAGG	MKESRWDIPKPNFKKDLEFGKQGEDQVKQFLQGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGIMITEAEWWVYVYTMNQAMIVVSTERLKRYIKMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDSAYDDVKE*
Ga0104242_10020317	F052563	N/A	MSSEESYGWIYDIIPAKQVEEIESKAKNLQQNLDNGVNVVLSATNDSAIRLCRAYHYGTQGNIEAWMHIMGFLDALIGTIEEHLEDEGIDPYAK*