Scaffold Ga0104242_1001653

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1001653
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4478
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F074876	Metagenome / Metatranscriptome	119	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_100165310	F000473	AGGAG	VFINKDKDHFKYGINQWTGEPNKPVFYTKEMAIKFKELIKDLPDLLVDIAQYPEFLAIRLYEDNFLQFHGTRKEIAIDRVMKIKSMIESYGVRCELEGKPSERIL*
Ga0104242_100165311	F074876	GGAGG	VKESYEVINIVYLHEEGVYGTVEQMGAFMSVVKYTKDEVEHNELIENDEFAIIDEIVFHHIEEED*
Ga0104242_100165312	F000671	GAGG	MEKILCYCCNKSKHKLNAKKSALLPINLLMCETCISSKLEPRWVIILAGRSNGPDHVREHVLKKRYIGNDISASELLV*
Ga0104242_100165313	F077310	N/A	MDLLSVSIAISAAILSGMGTAIISGIKESKREKTRQAEREHDHLKLELKDLKIQLYQVERDLTEWKDKYYSAIQELIVVKAELEETLIKIS