Scaffold Ga0104242_1000611

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1000611
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7450
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F035767	Metagenome / Metatranscriptome	171	N
F057370	Metagenome / Metatranscriptome	136	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_100061110	F101173	GAG	MAVRYQTTVYNEKGRKITLAIKDTTFSGQPGTFDTINIQIQYDSESSQGMERFSPIIGSRCRLNLIINTAGLQTLLNDIGFAVEGRFSMELTSYEDDNTTVGFKWYGYIVTDLVEFEDVTTDVGFNAQIEAIDGLAWLKTLLYKSEVGPYLGQDTVVQHICNCLNQLDFVQENLVANNLPILHTVFNWHENSINYSANNDFALRTVISHRAFYHRDTKNNYTYQSCYDVLKKICQAFGARLLFSGNQYWFIQVNEYLNPKNHRYFKYNGFGIQSSGSFDLDFTTLNLQTNLSNSALMRLSGGRWSYYPPLKNVVVRYNYFGKQNLLSGKEYSYATNATPEQVITPTLDSTNVDARLSYTGILNFYAAVVSPATFQPYQLVFAVKLASIVNSFPLQGFASANWTLGSGWLIADGILEGTLAATEAYYTTFSVTANRKYYVKIKVKLDNTGELRLRLGGVTKTITESGDYEYIIQSTNTNTLKLDSITSPAFTGKITALEVKQENYYLKRLVNYTTGFNFQLDAASWETSASEYEFNVETVYNDLAFVVNKTISFDTLNIPETGEYVWSMRLKEMRNEAGTNIINGYALSYTIMNNYLEFLPDGTIGGQADIKEYGSDNDEKSSVVFDLDTYLGDGISATTNGALKVKEDAGTFKLSNTWDVSSGQGFNAVTQLLVNEVIKGQLRPLPRMIDMPFQNLSIDNVYLPHKVIEYSSGYYVFERGLYDLNTDIWRGDYFKIDDHA*
Ga0104242_100061111	F008815	GGA	VIILKLMIMPSFTERTVISKPRDYAQVANNAGSGGVVNNNVTETKNNVTVTGSLINIFSEEFLAASSNILTYTKNNGVLPTTNTDASIQVYQNGQKLIGSQYTITQPDTITIDSDTHYNGANYIIFAII
Ga0104242_10006112	F035767	N/A	MGYLTAKQINHLKDLQKGNVKGKRSYQGISLRVVGLADAVIEFAELMEQCTVNERTRVIEAGVPIALDIYKSLVPISSKPHRIRTRPWKNKKMTGWEKTDGASIWVQPGNLKNSIIDLSKNLVSYKRAVGAIGPLYRRGTMNRGINSEEGANGFYAHMVFGSTKAWTNKIVVRARNLSREKVIKTMRDECIFIMKERPKYFWQIS*
Ga0104242_10006114	F057370	N/A	MKLRLIKEWNNKPAGATGVFLSDYGKELIADGIAELLDDDFVVEVMPEKKTQETQQPIYIPVPMPMEYFEEENDLENIDVNINLSKPKK*
Ga0104242_10006116	F006590	N/A	MKTIKIANADIPVKFGMFVLGTFLRERNLKLSDLSQLGEDLLFVLELAFAGVQAGYKAKGEKCPYTLEKFCDLVDLDKGGINRITELITNEITVQEDSERKNEIAEEQN*