Scaffold Ga0104242_1000484

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1000484
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8336
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F057320	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_100048411	F057320	AGG	MSYVGLYDDAGSRNAFYIIKDRKIGNKRIGFKEFENENEAKFAHKIQKHLAQHDLAPMVYGDVGRIRYDGELTDYGYLTEVARPMPDCYDDEYCDGYCFESECKNGILIMQVVSYLEEHGLKYWDSHRGNFGFVRRNKKWVPVVIDVGVESFREWDESIYGEYEYDR*
Ga0104242_100048412	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDIDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKNKAKADAWRKALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0104242_100048414	F006543	GGAG	MKKFSFAVDIVSDELDRDSVVDSIRECLSNSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEAAGDAHDGKVEKETVGA*