NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104259_1001192

Scaffold Ga0104259_1001192


Overview

Basic Information
Taxon OID3300008958 Open in IMG/M
Scaffold IDGa0104259_1001192 Open in IMG/M
Source Dataset NameMarine microbial communities from eastern North Pacific Ocean - P1 particle-associated
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1727
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Nameeastern North Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011229Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0104259_10011921F011229N/AVPRPFFVLGVAMFRFAFALGAPLAAAQADGNPHEWDRLRRCDHTDYDPPCGACEGVGGYVNSDEKDDITIASCNLVDIYDAETRVRPVWGSDVTEFKSHEILIGVKEDPACFQSFPHNDSTATNCYKPQEVQVYSDMNKYKALVMKANQGGNAWGIAGNVSSTIYHQNEHMWIVNKLSGVVNQCICTEPREGGDATTPAVYPLQYNWVDNLFYVSTEKIGVEYGVGELELDHWAFGPHHAWTNPATGVIVRMWQPFNGLQIFEPGQWQTGSAYEDASETISHLFAKDEINHFFDQLSVDGTKAPDLCTKSGATLNTFRIKCDDNGFPAAYDPPDAPSSLLDYMTKPSGTNMAKASDLKRARSKVPGDNFKGDDFQDMSETLNKYLQKHAPKSKDCDLWTMEELQQLQISLLMLRDTQLNDVYHDTDDNRKINKDVQQLVQEWDELNKLASTDPDLARARRDGHCHEAVMWYVHHLPEDTKDLLKDDISLPLLSMMRHDLKEKSMHGERVHRAYQEQVSCASCHSAVFPTEITV*
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