Scaffold Ga0104259_1000003

Overview

Basic Information

• Taxon OID: 3300008958
• Scaffold ID: Ga0104259_1000003
• Source Dataset Name: Marine microbial communities from eastern North Pacific Ocean - P1 particle-associated
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Georgia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16123
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location

• Location Name: eastern North Pacific Ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025849	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104259_10000036	F025849	N/A	MNLNLFRYLVQLIGDPATTFRNLHEHQCKCLEQSSISNRQKETKNDVYLQNENSVGDWISLSLDKKSFKALERIEMNEKLKLPYEGRQLFTRWTHSYPNSNEIKSKTFYIKYKNELSVVDKIMLNNFQNKYFYHIIDDIIYSLKSKNVERDNLLTILYSPVLYLQNNFSIDFFDIWVDEIYIHQQSKVNKFLTKNSSNLEPFSYITIKFLYTTKLPVKKPEPLW*