Scaffold Ga0104261_1018641

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104261_1018641

Scaffold Ga0104261_1018641

Overview

Basic Information
Taxon OID	3300008956 Open in IMG/M
Scaffold ID	Ga0104261_1018641 Open in IMG/M
Source Dataset Name	Marine microbial communities from eastern North Pacific Ocean - P8 free-living McLane
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	823
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Name	eastern North Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020254	Metagenome / Metatranscriptome	225	Y
F021734	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104261_10186412	F021734	GGA	MEVLAIIGLIAGIGYGMDNDWKVAKAYKSYENCRVDHPKHHNTMTSWQYDPCNLAAFKVKEHM*
Ga0104261_10186413	F020254	GGAG	MEMLWTISAPAWQWVLGTVVALYIWEEYLEHVWYKFKHWVLNEPHKGK*

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