Scaffold Ga0115650_1223406

Overview

Basic Information

• Taxon OID: 3300008954
• Scaffold ID: Ga0115650_1223406
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1124
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F090254	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115650_12234063	F012401	GGAGG	MFEGLLTLEKAALERLTESRIASGSLGEELEEFLSSAGVYWDEIGQEYFSIENFQRETFERLTQEYINEDYA*
Ga0115650_12234064	F090254	AGAAG	MGIEETNYSAIDLVNIVDGAELVTVVRDTYLCVWYGGHVVNVYDLTVVQEPDYQVLPMFAPRCLLTVHDAIDDYFEGLDFDNENEGLTTDPVRGIVYTESDDPTEVN*