Scaffold Ga0104241_1004593

Overview

Basic Information

• Taxon OID: 3300008953
• Scaffold ID: Ga0104241_1004593
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 991
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028094	Metagenome / Metatranscriptome	192	N
F080979	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104241_10045931	F080979	AGG	MQDDKPINMTKISPKEEKNYKLLKEGQDFQVGDLIHLVDDEYVKLNKDNQLLKTKVTKYNKALRKTK*
Ga0104241_10045933	F028094	N/A	FDEMFSDDGYVYNKYVDFLLDLVPFRLAWKARYWPGNIRWWIKCKYQKIRYGVSDDDVYSLGYNIAVFVLPRLKYFKEKGKTGIPVCFLPNNFHLLEGDEQTAAEEKGIKEMEAALDEMIFAFEYIIDGDKMCELPESLSFKGKDFDFNSEKSIEEKEDWKRYMEKANKLNERKENGLMLFAKYYDTLWI*