NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104241_1001459

Scaffold Ga0104241_1001459


Overview

Basic Information
Taxon OID3300008953 Open in IMG/M
Scaffold IDGa0104241_1001459 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1827
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015718Metagenome / Metatranscriptome252Y
F023805Metagenome / Metatranscriptome208Y
F099299Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0104241_10014591F023805N/AMIKLKDILLEGKPSTIFVPRRIEDRTERLISLYIRNGSKGDLNLNGLKLTKLPEILKNVNVEGFFDCDNNELTSLENA
Ga0104241_10014592F099299N/AMTKNELKQLIKEVINETLTVESYEDGIKDVKDRMAYLALRKQEKDYISKSKQSSSPIKKQHYMDMSKQVLDKALAILKKHKVID*
Ga0104241_10014593F015718AGGAVNIVPIIRDGKIVMDNINEQYPVTNVMWKYMDSMTLGEYLGSLGVDYKSYGFIKSFPRSFYLRIGFYQPRYAIDTNSHLYYNLVAVMDNDPWHRKFKTFPVGNKVLGNDVYKYFPLMATGLSNYGSGNYNCYVIVTTVAGKPVYCVDVLN*
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