Scaffold Ga0104241_1001130

Overview

Basic Information

• Taxon OID: 3300008953
• Scaffold ID: Ga0104241_1001130
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2099
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104241_10011302	F105192	N/A	MNIPLAEIIITLFAAAISGLLTAQFSARRSKKEKIEHLAEKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYYQALQELIRVKAELEGTLLKLTHIEIHSNED*
Ga0104241_10011303	F072349	AGGCGG	MDKVLCYSCNKSKNELSLKKSLILPINLLLCKTCSDNKFEPRWTVILAGRQYGSDHVKEFISKKKYTGPDITASELLI*
Ga0104241_10011305	F011394	AGGA	MFIDKNKDHFKYGINEWTGEPNKPTFYNKEMALKIREIKKPTPTLEMDIVKYPEFLAIRLYEDNFSQYDGSMRVRVIEYIEMVKNILESYGVRVELEGKPGGRR*