Scaffold Ga0115651_1127863

Overview

Basic Information

• Taxon OID: 3300008952
• Scaffold ID: Ga0115651_1127863
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1832
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F031514	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115651_11278633	F001478	GGTGG	MFRLKGAIIENDHGKVFDIQGGVDAENRNIIVWNKHGKLNQQWDVIYVDEWQGEPGKGEFNERFGLYVERPFYIVSQLPSHRYLDLINNRNMVIKTPNGRSTQIWWFDQRSLTIKTKLNNQSWDIKNSGRTNNM*
Ga0115651_11278635	F031514	N/A	KGELNKEFGLYVERPFYIVSQLPSNRYLEVIDNRNMVIKTPNGRNTQIWYFDQTSKTINTKLNNQSMEIQNAGRSSNAQIWSTNSGWW*