NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103486_1006458

Scaffold Ga0103486_1006458


Overview

Basic Information
Taxon OID3300008921 Open in IMG/M
Scaffold IDGa0103486_1006458 Open in IMG/M
Source Dataset NameMicrobial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NB1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterSodertorn University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Source Dataset Sampling Location
Location NameBarcelona, Spain
CoordinatesLat. (o)41.666Long. (o)2.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015096Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0103486_10064581F015096N/AMNYGTQWLARRKELEDKYVELMLAKYPLLTDVTTDIQRKNGTRMFELNHKKYGPTRFATYKSGMVRKIIRTRFGELSCYQLNPQRINTRYYMTLSDNSELNVKSYEGKQRVGITNGLARLVYLEKYLIKNYDLDSVQDVIEVDGVLYK

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