NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0103486_1005510

Scaffold Ga0103486_1005510


Overview

Basic Information
Taxon OID3300008921 Open in IMG/M
Scaffold IDGa0103486_1005510 Open in IMG/M
Source Dataset NameMicrobial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NB1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterSodertorn University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)876
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Source Dataset Sampling Location
Location NameBarcelona, Spain
CoordinatesLat. (o)41.666Long. (o)2.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011139Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0103486_10055101F011139AGGMGLFFGLLAFMPVIYNCYNVFHKYVATIPMQNSLLQTSTFIFFMMSLYCTASMLPCGRYYYDPEGGYVGNP*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.