Scaffold Ga0103486_1000046

Overview

Basic Information

• Taxon OID: 3300008921
• Scaffold ID: Ga0103486_1000046
• Source Dataset Name: Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NB1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Sodertorn University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10850
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Source Dataset Sampling Location

• Location Name: Barcelona, Spain
• Coordinates
  • Lat. (^o): 41.666
  • Long. (^o): 2.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021302	Metagenome / Metatranscriptome	219	Y
F045106	Metagenome / Metatranscriptome	153	N
F103885	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103486_100004618	F103885	N/A	MNNLLQSIKPKYIKLINESDYKFTSTKILAKLESSKFYGDLTISEIRDIYDMCNINALRVSAWDYRFGDNLLIDEND*
Ga0103486_100004628	F045106	N/A	MKPKNVLFIEEFIEILGGDNFFLCDSIHQEQLFTMQDKLAKLIADHANNGTSVARHLVPLLPNTFNVE*
Ga0103486_10000469	F021302	N/A	MRTLIQKFKKNRRKAKHVKFLHLKIAELHGEIIAESFKGEFQLNKGITIIHSNVENKAKLLKKYNRRLKLIVY*