Scaffold Ga0103908_100385

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103908_100385

Scaffold Ga0103908_100385

Overview

Basic Information
Taxon OID	3300008853 Open in IMG/M
Scaffold ID	Ga0103908_100385 Open in IMG/M
Source Dataset Name	Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2020
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Massachusetts Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	623
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Microbial Communities Of Surface Water Sampled In Lagrangian Time Series From North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location Name	North Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090441	Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103908_1003851	F090441	N/A	RFVTESRTFQQPIIESEDFIKGEVWELATLSFPDSLALGALITRRVIVGCQFPDAASCRKNDCDTFRSHSGT*

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