NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103951_10640847

Scaffold Ga0103951_10640847


Overview

Basic Information
Taxon OID3300008832 Open in IMG/M
Scaffold IDGa0103951_10640847 Open in IMG/M
Source Dataset NameEukaryotic communities of water collected during the Tara Oceans expedition - TARA_A200000150
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGenoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055666Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0103951_106408471F055666N/ADAIDGMHGPTRGWIGCAQFIHWATNHVASKVAGVEATGVDFYHVTDYSKKDFLKAIDNAVHDPKSQDHQNFYEFLLTIFVEEDHQCKGVVCKEGFARLVDRAAYVPRHFGLAPQSADAARVAELYAAMEDSRLGGVTFRKFLQWTTEHTKAKIEAHKE*

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