NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103951_10568219

Scaffold Ga0103951_10568219


Overview

Basic Information
Taxon OID3300008832 Open in IMG/M
Scaffold IDGa0103951_10568219 Open in IMG/M
Source Dataset NameEukaryotic communities of water collected during the Tara Oceans expedition - TARA_A200000150
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGenoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)616
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049393Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0103951_105682191F049393N/AIGAICAGTFTMARIMGAEQTGSGSSPKNMIMGVLMCIASLLCGSLNLALAGGLGETKLNVYDTVAYMAIPATVFLLPIAVFLQKPVPGRWPEVFGRETMSDLEILQGVWSLNKTTMFWLVCSGVFSFIYNIIQFSIVHTLSPSATAFGGNFNKAALIFLTLMLPFLRVHELPGPPYIQVIWAAVIVNIFAFSYYSYLQLQAKQET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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