NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0103951_10469225

Scaffold Ga0103951_10469225


Overview

Basic Information
Taxon OID3300008832 Open in IMG/M
Scaffold IDGa0103951_10469225 Open in IMG/M
Source Dataset NameEukaryotic communities of water collected during the Tara Oceans expedition - TARA_A200000150
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGenoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104402Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0103951_104692251F104402N/ASIQHPKGKQYTTPISTTMQCVVNLTWQFFAVYTLIWIAVTVKECTGWEWHFITNAMENAKGTIAFCPMLAILFVGTRMRALQLTNNRGAPQGWAQDGMYMATWSIMLQFLMVLLIPVCTLVMEGKAHHPELDEDGNVKWQPSGKIALIVVQIIRWIGFLLLYIGTICVMVGAYTMTPETANGRGSVPLVGDTPMAKEPVGPTDVYGVPNF*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.