Scaffold Ga0103696_1023231

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0103696_1023231

Scaffold Ga0103696_1023231

Overview

Basic Information
Taxon OID	3300008791 Open in IMG/M
Scaffold ID	Ga0103696_1023231 Open in IMG/M
Source Dataset Name	Microbial communities from seawater in eastern North Pacific Ocean - P1 free-living McLane
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	672
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Name	eastern North Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043416	Metagenome / Metatranscriptome	156	Y
F063590	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103696_10232312	F043416	AGGAG	MFAKLRDWLDICKVHWKEIFAMSFMLHFIMDLFIIGPLFFLLGYFFGISVEH*
Ga0103696_10232313	F063590	GGAG	MIEILQEVTDWGDQQINNGIYHVNGAGQLVQYNDKVSKTPMKQFSKSRRKFTKIGERE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.