NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103696_1004145

Scaffold Ga0103696_1004145


Overview

Basic Information
Taxon OID3300008791 Open in IMG/M
Scaffold IDGa0103696_1004145 Open in IMG/M
Source Dataset NameMicrobial communities from seawater in eastern North Pacific Ocean - P1 free-living McLane
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Nameeastern North Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074917Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0103696_10041453F074917N/AMRFAKTKRQKPASSLTTKAKDKLDTIRQNPINQQKKQCGDRCHYKYSQCSSAGFTPRRPGNPVDFLTDLSNKLCGRHFSHRYLPIQVLINQDTAINTLRFPWVFDQANGQHLMKSILAIF

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