NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103638_1000216

Scaffold Ga0103638_1000216


Overview

Basic Information
Taxon OID3300008785 Open in IMG/M
Scaffold IDGa0103638_1000216 Open in IMG/M
Source Dataset NameMicrobial communities from wetland soil in Czech Republic - R1_cDNA
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterFriedrich Schiller University of Jena
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1008
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Source Dataset Sampling Location
Location NameCzech Republic
CoordinatesLat. (o)50.14667Long. (o)12.45083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024050Metagenome / Metatranscriptome207Y
F069734Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0103638_10002161F069734GAGMMSPWLNRTLHLRLAPQMNLRVHSGHGKLGMASGAFTVPIRRFTIGKPTMNSLTETLTYAFYHASVAVPTSYRA
Ga0103638_10002162F024050GGCGGMAVRVTPNVACLWRCLNQQGSELPRWLTSSCHACDEGLELPLIPHLRLYRRWITESPRCSHHSAVPTYRSLSFPKSRPFGIADDSLSELPRTLNPPAPIDGYPSYLGSRTIRFASVEPPGCPRHSSSATAIDQFPGCPKSWVSHRSPIPRASSCPESWFLG*
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