Scaffold Ga0103637_1000519

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103637_1000519

Scaffold Ga0103637_1000519

Overview

Basic Information
Taxon OID	3300008784 Open in IMG/M
Scaffold ID	Ga0103637_1000519 Open in IMG/M
Source Dataset Name	Microbial communities from wetland soil in Czech Republic - M1_cDNA
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Friedrich Schiller University of Jena
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1209
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Source Dataset Sampling Location
Location Name	Czech Republic
Coordinates	Lat. (^o)	50.14667	Long. (^o)	12.45083	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003313	Metagenome / Metatranscriptome	494	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103637_10005193	F003313	GGA	LDKALRIYAWFLLIVTALPAAARLAKPKELARILLVRYQNPQRRKRARIGGLIYLGLSLFAIPFLLRAEMRQERWLIMAVLVGAVSALEFLLNSRLFSEDALTRQNRIFGGVYAAMAIAVSLLLFTR*

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