NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103637_1000067

Scaffold Ga0103637_1000067


Overview

Basic Information
Taxon OID3300008784 Open in IMG/M
Scaffold IDGa0103637_1000067 Open in IMG/M
Source Dataset NameMicrobial communities from wetland soil in Czech Republic - M1_cDNA
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterFriedrich Schiller University of Jena
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2613
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Source Dataset Sampling Location
Location NameCzech Republic
CoordinatesLat. (o)50.14667Long. (o)12.45083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015124Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0103637_10000672F015124GGAVTTSSRAQECAAALQQGTGQPTQVANSVPQAVTRLQTREYDALAIDQSLLEADFRALDTLLNHAGTALPIYVNLALHHSDRVVRETQVALRRAEREKQWAMSLAERVLRNQLRAQVTGILLTSELALRQPAIPAEVVAKLRLVQDMAEKMRSQLHVF*

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