Scaffold Ga0115663_1005150

Overview

Basic Information

• Taxon OID: 3300008740
• Scaffold ID: Ga0115663_1005150
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6053
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019330	Metagenome	230	Y
F062828	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115663_10051506	F062828	GGA	MGKTLEETRSRGVVMGECKVVLVAQEDIEYVWDEVAPLMDLALKHSEGELLTEDLVEHLDNEDLRLWIAMKNDKVIAAMVTEIITYPRKKILRVITLAGKDMNLWYDFLPSVEGYALSHQCSSLEAWTRKGMTRKLKDWKHSYDIITKDLKPRMQ*
Ga0115663_10051509	F019330	N/A	KSTYDAEGNETIGPETENHNRTVDKTYWDWPVAPDAEVDPYHVRYE*