Scaffold Ga0115663_1002315

Overview

Basic Information

• Taxon OID: 3300008740
• Scaffold ID: Ga0115663_1002315
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10769
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (23.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015789	Metagenome	252	Y
F021787	Metagenome	217	N
F024125	Metagenome / Metatranscriptome	207	N
F029898	Metagenome	187	N
F054936	Metagenome	139	N
F070553	Metagenome / Metatranscriptome	123	N
F096037	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115663_100231511	F015789	N/A	MRDKNIKEKTVKVKGPWVDGVQTVKESSQDECTSYTPLNTRVKGQWFRVVKW*
Ga0115663_100231513	F024125	GGA	VLDIAQKLCNNKEVMRETKTNEAGQTLDRFTGKVLTCDQCGAEDNEGNEVREWGNPYDWGTICEECDCHET*
Ga0115663_100231514	F054936	N/A	MRKKYYKTPLNPRPNGQDGSLGKVADNWDDCDAMSHYTYDKGWWAETKRLVDESYAKLQAKGFFDSTSDYWAKRRKTDPRCQGQK*
Ga0115663_100231517	F021787	N/A	MTDMISCEEVFEMDADARAEFDVVCDEWLNEAILAQDAEEDLVECEGCGEQWYRPEGHTGATIDWCRKCYKNDPYYV*
Ga0115663_100231520	F096037	N/A	MKTTVYAWGAEKNNVLHIYAGQTTQKDITTRLNGVKNIVTGPANSWFVGPEGSTLGAYNLDLIYADTTQNYSRHKEQKAINAVWAVEERYRGAKLPVRAMNTNRATRLAKQQNYTYDRTTSVYGHVLLHNTELDGDFNNEVYQAIESWIKNKIDDSTTLKRKFEKVIKAKAKKEALIKNIAKALDMNSVLA*
Ga0115663_100231527	F029898	N/A	VLDIVGQMSYTIDSVMRKIIEMIKKIMKKNPVRTQELTYQREYDGAVKDYFVNIFEEWADYYVAYTYDRHGANCGVKRFNKGNIQEMKPAKRNFALVTA*
Ga0115663_10023156	F070553	GGA	MLDNFNAVAKLIEMNKQFRKIIKELAANGFSIKQTNKGFRIAPPKSCTNQRVYFTHGGEACLHPIRRDFVKEYGYRINFKK*