NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115657_1231057

Scaffold Ga0115657_1231057


Overview

Basic Information
Taxon OID3300008735 Open in IMG/M
Scaffold IDGa0115657_1231057 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)929
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044422Metagenome154Y
F058429Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0115657_12310572F058429N/AMAEIIKFPTTTEKEYLNGTKVAKEAFTKMKATEENLNWRLNFKDWKEYKLTEADVEQVALFGEHMKFAPIVASRLASKLAEVLCLIKYSDPLDEYY*
Ga0115657_12310573F044422N/AMNIINMSRKQYDTNWITYYSYQAFSSDMPVHQINDSNWWLKVENKLPAFFINAEKVFRQMPAECFYITAERSTTMDMSNWQKQCEDYFSKTIEEIKCLTIKEESKKPKKI*

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